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RÓïÑÔanmap±àÂ빦ÄÜnonIntronicTranscriptLength()º¯Êý-ÖÐÓ¢ÎĶÔÕÕ°ïÖúÎĵµ
By MicroRbt Martinez PhD
RÓïÑÔº¯ÊýÃû£ºnonIntronicTranscriptLength()
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À´×Ô×ÊÔ´¿â£ºBionconductor-software
nonIntronicTranscriptLength()º¯ÊýËùÊôRÓïÑÔ°ü£ºËùÔÚR°ü¾ßÌåÃû³Æ¡¢°ü¹¦ÄܵÄÖÐÓ¢ÎÄË«ÓïÃèÊö¼ûÕýÎĺóÃæ'--ËùÔÚRÓïÑÔ°üÐÅÏ¢--'²¿·Ö¡£
ÃèÊö-----Description-----
Functions to deal with coding regions and UTRs
´¦Àí±àÂëÇøÓòºÍUTRµÄ¹¦ÄÜ
ʹÓ÷½·¨-----Usage-----
transcriptToUtrRange( ids, end=c( "both", "5", "3" ), as.data.frame=FALSE, on.translation.error=stop )
transcriptToUtrExon( ids, end=c( 'both', '5', '3' ), as.vector=FALSE, on.translation.error=stop )
transcriptToCodingRange( ids, end=c( "both", "5", "3" ), as.data.frame=FALSE, on.translation.error=stop )
transcriptToCodingExon( ids, end=c( 'both', '5', '3' ), as.vector=FALSE, on.translation.error=stop )
utrProbesets( probesets, transcripts, end=c( "both", "5", "3" ), on.translation.error=stop )
codingProbesets( probesets, transcripts, end=c( "both", "5", "3" ), on.translation.error=stop )
nonIntronicTranscriptLength( ids, end=c( 'none', 'both', '5', '3' ), on.translation.error=stop )
nonIntronicGeneLength( ids )
²ÎÊý-----Arguments-----
²ÎÊýids½éÉÜ: A vector of Transcript Names, or a RangedData object of Transcripts returned from another annmap call.
±Ê¼Ãû³ÆµÄÏòÁ¿£¬»ò´ÓÁíÒ»¸öanmapµ÷Ó÷µ»ØµÄ±Ê¼µÄRangedData¶ÔÏó¡£
²ÎÊýas.data.frame½éÉÜ: If FALSE, data will be converted to a RangedData object if possible, otherwise a data.frame
Èç¹ûΪFALSE£¬ÔòÊý¾Ý½«¾¡¿ÉÄÜת»»ÎªRangedData¶ÔÏ󣬷ñÔò½«×ª»»Îªdata.frame
²ÎÊýas.vector½éÉÜ: If TRUE returns a vector of database identifiers. If FALSE returns a link{GRanges} object containing detailed annotation.
Èç¹ûTRUE·µ»ØÊý¾Ý¿â±êʶ·ûµÄÏòÁ¿¡£Èç¹ûFALSE·µ»Ø°üº¬ÏêϸעÊ͵Älink{GRanges}¶ÔÏó¡£
²ÎÊýprobesets½éÉÜ: An optional vector of Probeset Names, or a RangedData object of Probesets returned from another annmap call.
̽Õ뼯Ãû³ÆµÄ¿ÉÑ¡ÏòÁ¿£¬»ò´ÓÁíÒ»¸öanmapµ÷Ó÷µ»ØµÄ̽Õ뼯µÄRangedData¶ÔÏó¡£
²ÎÊýtranscripts½éÉÜ: An optional vector of Transcript Names, or a RangedData object of Transcripts returned from another annmap call.
±Ê¼Ãû³ÆµÄ¿ÉÑ¡ÏòÁ¿£¬»ò´ÓÁíÒ»¸öanmapµ÷Ó÷µ»ØµÄ±Ê¼µÄRangedData¶ÔÏó¡£
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