RÓïÑÔÖÐÎÄÍø

 ÕÒ»ØÃÜÂë
 Á¢¼´×¢²á
²é¿´: 479|»Ø¸´: 0

RÓïÑÔanmap±àÂ빦ÄÜnonIntronicTranscriptLength()º¯Êý-ÖÐÓ¢ÎĶÔÕÕ°ïÖúÎĵµ

[¸´ÖÆÁ´½Ó]
·¢±íÓÚ 2021-2-19 23:49:56 | ÏÔʾȫ²¿Â¥²ã |ÔĶÁģʽ
        RÓïÑÔanmap±àÂ빦ÄÜnonIntronicTranscriptLength()º¯Êý-ÖÐÓ¢ÎĶÔÕÕ°ïÖúÎĵµ

                                         By MicroRbt Martinez PhD

RÓïÑÔº¯ÊýÃû£ºnonIntronicTranscriptLength()
RÓïÑÔº¯Êý¹¦ÄÜ£ºanmap±àÂ빦ÄÜ
À´×Ô×ÊÔ´¿â£ºBionconductor-software
nonIntronicTranscriptLength()º¯ÊýËùÊôRÓïÑÔ°ü£ºËùÔÚR°ü¾ßÌåÃû³Æ¡¢°ü¹¦ÄܵÄÖÐÓ¢ÎÄË«ÓïÃèÊö¼ûÕýÎĺóÃæ'--ËùÔÚRÓïÑÔ°üÐÅÏ¢--'²¿·Ö¡£

ÃèÊö-----Description-----

Functions to deal with coding regions and UTRs
´¦Àí±àÂëÇøÓòºÍUTRµÄ¹¦ÄÜ


ʹÓ÷½·¨-----Usage-----

transcriptToUtrRange( ids, end=c( "both", "5", "3" ), as.data.frame=FALSE, on.translation.error=stop )
transcriptToUtrExon( ids, end=c( 'both', '5', '3' ), as.vector=FALSE, on.translation.error=stop )
transcriptToCodingRange( ids, end=c( "both", "5", "3" ), as.data.frame=FALSE, on.translation.error=stop )
transcriptToCodingExon( ids, end=c( 'both', '5', '3' ), as.vector=FALSE, on.translation.error=stop )
utrProbesets( probesets, transcripts, end=c( "both", "5", "3" ), on.translation.error=stop )
codingProbesets( probesets, transcripts, end=c( "both", "5", "3" ), on.translation.error=stop )
nonIntronicTranscriptLength( ids, end=c( 'none', 'both', '5', '3' ), on.translation.error=stop )
nonIntronicGeneLength( ids )

²ÎÊý-----Arguments-----

²ÎÊýids½éÉÜ: A vector of Transcript Names, or a RangedData object of Transcripts returned from another annmap call.
±Ê¼Ãû³ÆµÄÏòÁ¿£¬»ò´ÓÁíÒ»¸öanmapµ÷Ó÷µ»ØµÄ±Ê¼µÄRangedData¶ÔÏó¡£

²ÎÊýas.data.frame½éÉÜ: If FALSE, data will be converted to a RangedData object if possible, otherwise a data.frame
Èç¹ûΪFALSE£¬ÔòÊý¾Ý½«¾¡¿ÉÄÜת»»ÎªRangedData¶ÔÏ󣬷ñÔò½«×ª»»Îªdata.frame

²ÎÊýas.vector½éÉÜ: If TRUE returns a vector of database identifiers. If FALSE returns a link{GRanges} object containing detailed annotation.
Èç¹ûTRUE·µ»ØÊý¾Ý¿â±êʶ·ûµÄÏòÁ¿¡£Èç¹ûFALSE·µ»Ø°üº¬ÏêϸעÊ͵Älink{GRanges}¶ÔÏó¡£

²ÎÊýprobesets½éÉÜ: An optional vector of Probeset Names, or a RangedData object of Probesets returned from another annmap call.
̽Õ뼯Ãû³ÆµÄ¿ÉÑ¡ÏòÁ¿£¬»ò´ÓÁíÒ»¸öanmapµ÷Ó÷µ»ØµÄ̽Õ뼯µÄRangedData¶ÔÏó¡£

²ÎÊýtranscripts½éÉÜ: An optional vector of Transcript Names, or a RangedData object of Transcripts returned from another annmap call.
±Ê¼Ãû³ÆµÄ¿ÉÑ¡ÏòÁ¿£¬»ò´ÓÁíÒ»¸öanmapµ÷Ó÷µ»ØµÄ±Ê¼µÄRangedData¶ÔÏó¡£

²ÎÊýend½éÉ
-----δÍ꣬´ýÐø-----£¬¡ý¡ý¡ýÕ¹¿ªÊ£Óà72%¡ý¡ý¡ý
¹ºÂòÖ÷Ìâ Ç°ÐÐÐèÒªÄúµÄÖ§³Ö£¬ÇëÔÞÖú×÷Õß ¡¾15 ½ðÇ®¡¿ ¾ÍÄÜä¯ÀÀÈ«²¿100%ÄÚÈÝÀ²£¡£¨±¾ÌùÒ»´ÎÔÞÖú¡¢ÓÀ¾Ã¿É¶Á£©
»Ø¸´

ʹÓõÀ¾ß ¾Ù±¨

ÄúÐèÒªµÇ¼ºó²Å¿ÉÒÔ»ØÌû µÇ¼ | Á¢¼´×¢²á

±¾°æ»ý·Ö¹æÔò

ÊÖ»ú°æ|СºÚÎÝ|Archiver|RÓïÑÔÖÐÎÄÍø    

GMT+8, 2024-7-2 12:56 , Processed in 0.028560 second(s), 23 queries .

Powered by Discuz! X3.4

Copyright © 2001-2020, Tencent Cloud.

¿ìËٻظ´ ·µ»Ø¶¥²¿ ·µ»ØÁбí