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RÓïÑÔanmap'utils'º¯ÊýgeneToGeneRegionTrack()º¯Êý-ÖÐÓ¢ÎĶÔÕÕ°ïÖúÎĵµ
By MicroRbt Martinez PhD
RÓïÑÔº¯ÊýÃû£ºgeneToGeneRegionTrack()
RÓïÑÔº¯Êý¹¦ÄÜ£ºanmap'utils'º¯Êý
À´×Ô×ÊÔ´¿â£ºBionconductor-software
geneToGeneRegionTrack()º¯ÊýËùÊôRÓïÑÔ°ü£ºËùÔÚR°ü¾ßÌåÃû³Æ¡¢°ü¹¦ÄܵÄÖÐÓ¢ÎÄË«ÓïÃèÊö¼ûÕýÎĺóÃæ'--ËùÔÚRÓïÑÔ°üÐÅÏ¢--'²¿·Ö¡£
ÃèÊö-----Description-----
Functions to connect to the database and manage the database connections.
ÓÃÓÚÁ¬½ÓÊý¾Ý¿âºÍ¹ÜÀíÊý¾Ý¿âÁ¬½ÓµÄ¹¦ÄÜ¡£
ʹÓ÷½·¨-----Usage-----
annmapConnect( name, use.webservice=FALSE, quiet.webservice=FALSE )
annmapDisconnect()
annmapAddConnection( dsname, species, version,
host='localhost',
username=as.character( Sys.info()[ 'user' ] ),
password='',
port='',
overwrite=FALSE,
testConnect=TRUE )
arrayType( name=NULL, pick.default=FALSE, silent=FALSE )
annmapToggleCaching()
annmapClearCache()
annmapRangeApply( x, f, filter=c( chr="space", start="start", end="end", strand="strand" ), coerce=c( as.character, as.numeric, as.numeric, as.numeric ), ... )
strandAsInteger( granges )
geneToGeneRegionTrack( genes, genome, coalesce.name=NULL, ... )
²ÎÊý-----Arguments-----
²ÎÊýname½éÉÜ: The name of the database to connect to, or the array to select.
ÒªÁ¬½ÓµÄÊý¾Ý¿âÃû³Æ»òҪѡÔñµÄÕóÁС£
²ÎÊýuse.webservice½éÉÜ: If TRUE, we will use the annmap webservices rather than a local MySQL installation.
Èç¹ûÊÇTRUE£¬ÎÒÃǽ«Ê¹ÓÃanmap Web·þÎñ¶ø²»ÊDZ¾µØMySQL°²×°¡£
²ÎÊýquiet.webservice½éÉÜ: If FALSE, there will be output as the webservice calls are processed. Set TRUE to silence these.
Èç¹ûΪFALSE£¬Ôò½«ÔÚ´¦ÀíWeb·þÎñµ÷ÓÃʱÊä³ö¡£½«TRUEÉèÖÃΪ¾²Òô¡£
²ÎÊýdsname½éÉÜ: The name of the datasource to add or modify.
ÒªÌí¼Ó»òÐ޸ĵÄÊý¾ÝÔ´µÄÃû³Æ¡£
²ÎÊýspecies½éÉÜ: The species of interest.
¸ÐÐËȤµÄÎïÖÖ¡£
²ÎÊýversion½éÉÜ: The version of the database to connect to.
ÒªÁ¬½ÓµÄÊý¾Ý¿â°æ±¾¡£
²ÎÊýhost½éÉÜ: The location of the MySQL installation.
MySQL°²×°µÄλÖá£
²ÎÊýusername½éÉ
-----δÍ꣬´ýÐø-----£¬¡ý¡ý¡ýÕ¹¿ªÊ£Óà72%¡ý¡ý¡ý
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